Classification and Genetic Diversity of Three Hare Species in Xinjiang Based on Mitochondrial DNA

The study aimed to explore the phylogeny and genetic diversity of 3 hare species in Xinjiang by molecular genetics methods, define the relationship and taxonomy status, assess diversity level of Lepus in Xinjiang, and provide the basic data for conservation genetics of hares in Xinjiang and even in China. Three mitochondrial DNA genes, COI, ND4 and 16S rRNA, were used as molecular markers, and the sequences of 3 genes of 57 samples collected from 8 different regions (4 geographic groups) in Xinjiang were determined by PCR amplification and sequencing technology. After the sequences of COI, ND4 and 16S rRNA of each sample were revised and pooled together, data were analyzed with softwares such as MEGA 7, DNAsp 6, Arlequin 3.1 and MrBayes 3.2. A total of 43 haplotypes were detected from the combined sequences of 3 genes of 57 hare samples. Five distinct clades (A-E) and 3 clusters were clearly showed in phylogenetic tree and median-joining network (MJN). Furthermore, the genetic distance between 3 clusters reached the level of species (4.21%-9.09%). However, the genetic distance between hares from northern Xinjiang (Clade E) and those from central Xinjiang (Clade D) were not up to the level of species (≤2.26%) in the third cluster. The haplotype diversity (h) of Lepus yarkandensis, Lepus tibetanus pamirensis and Lepus tolai lehmanni were higher(0.979±0.014, 0.972±0.064 and 0.972±0.064, respectively), while the nucleotide diversity (π) of the L. t. lehmanni and L. t. centrasiaticus were higher (0.033±0.018 and 0.023±0.015, respectively). Based on comprehensive analysis of 3 genes of mitochondrion and reference with published research, it is suggested that hares from southwestern Pamir Plateau of Xinjiang should belong to L. t. pamirensis. Meanwhile,hares distributed in northern and central Xinjiang might be considered as L. t. lehmanni and L. t. centrasiaticus. Moreover, there is abundant genetic diversity in the 3 hare species in Xinjiang, and the obvious phylogeographic pattern is showed.     

Comparative epidemiology of zoosporic plant pathogens

Loss of zoospores has happened independently several times in different phylogenic lines and has, it is claimed, no major phylogenetic significance. But whether or not, how, and under which conditions plant pathogens retain the ability to produce motile asexual spores has fundamental importance from an ecological and epidemiological perspective. Recent molecular investigations of the early evolution of fungi and oomycetes are shedding light on the issue of zoospore loss in organisms able to cause plant diseases. Zoospore loss may have accompanied the development of new forms of dispersal adapted to the terrestrial environment, or the simplification processes which often follow the shift to parasitic or biotrophic life-forms. In this review we consider hybridisation events between Phytophthora species, long distance dispersal of oomycetes, sporangia and zoospore survival, direct and indirect infection processes and newly observed sporulating structures. These aspects are all relevant features for an understanding of the epidemiology of zoosporic plant pathogens. Disease management should not be based on the presumption that the zoosporic stage is a weak link in the life cycle. Oomycete plant pathogens show remarkable flexibility in their life cycles and ability to adapt to changing environmental circumstances.

<Emphasis Type="Italic">Amaranthus leaf mottle virus</Emphasis>: 3′-end RNA sequence proves classification as distinct virus and reveals affinities within the genus <Emphasis Type="Italic">Potyvirus</Emphasis>

Amaranthus leaf mottle virus (AmLMV) was classified as a member of the genus Potyvirus on the basis of its particle morphology, serology, and biological properties (Casetta et al., 1986). Based on these properties, an Amaranthus viridis-infecting virus isolated in Spain, causing mottle and leaf blistering as well as reduced growth has been identified as AmLMV. The 3′ terminal genomic region of this and a reference isolate from Italy has been sequenced and reveals a 95% nucleotide identity between the two isolates. The sequenced part comprises the coat protein with 281 amino acids and 315 nucleotides of the 3′ untranslated region (UTR) preceding a polyadenylated tail. Pairwise comparisons and phylogenetic analysis of the nucleotide and deduced amino acid sequences of the CP and 3′ UTR of the cloned cDNAs with those of other potyviruses shows that AmLMV is a distinct potyvirus closely related to Potato virus Y.     

秆野螟属(Ostrinia)系统进化与分类研究进展

秆野螟属(Ostrinia)昆虫全球分布20种,寄主广泛,在农业生产中具有重要的经济意义。由于该属地理分布广泛,形态特征复杂,寄主和生态区重叠严重,秆野螟属系统发育研究还存在很多问题尚未解决。本文综合中国秆野螟属分类概况,对目前应用于秆野螟属系统发育研究的各种性状,包括形态特征、性信息素(生殖隔离)以及分子水平的研究进展作了阐述,并针对秆野螟属研究内容的复杂性及其研究现状,提出了相关对策。     

剪股颖属植物遗传分化及系统关系的分子标记研究

剪股颖属植物形态变异大、倍性复杂、种间易于杂交,导致异名多、分类混乱。本研究采用4种分子标记技术,对包括匍茎剪股颖、巨序剪股颖及红顶草在内的7种剪股颖,共58个个体的遗传分化和系统关系进行研究。根据谱带清晰程度及多态性,筛选出9个RAPD引物、2个SSR引物、5个ISSR引物及1个SCAR标记,并建立了最适的PCR反应条件。采用最大简约法和距离法对7种剪股颖植物进行系统树分析,并用靴带检验法计算内部分支的支持率。启发式搜索得到的简约树和由UPGMA方法得到的表征树近乎相同,其中,匍茎剪股颖和红顶草构成单系类群并得到100%的置信支持。红顶草显示了匍茎剪股颖特异性特征谱带,但同时具有不同于匍茎剪股颖的遗传分化,支持将红顶草视为匍茎剪股颖一个变种的观点。对匍茎剪股颖与巨序剪股颖间的遗传分化进行了探讨。     

Biomolecular relationships among isolates of<Emphasis Type="Italic">Tomato Yellow Leaf Curl Tanzania Virus</Emphasis>

An investigation of the biological properties of the virus causing tomato yellow leaf curl disease in Tanzania was initiated to compare it with other known tomato yellow leaf curl viruses. Properties relating to acquisition and inoculation feeding time, persistence, mechanical inoculation, seed transmission and host range were studied. Results obtained indicate that the virus was transmitted persistently byBemisia tabaci Genn., but it was not mechanically, sap- or seed-transmissible. Minimum acquisition and inoculation feeding time was 30 min.Capsicum annuum, Datura stramonium, Nicotiana glutinosa, N. tabacum andLycopersicon esculentum were found to be hosts of the virus among the plant species tested, whereasPhaseolus vulgaris was not. It is concluded that the properties of the agent causing yellow leaf curl symptoms in tomato plants from different regions in Tanzania are similar to those ofTomato yellow leaf curl Sardinia virus species studied elsewhere. http://www.phytoparasitica.org posting Feb. 20, 2003.     

Identification of Trichoderma SKT-1, a biological control agent against seedborne pathogens of rice

Trichoderma SKT-1 was previously reported as a powerful biological control agent against seedborne pathogens of rice, but the taxonomic disposition of the fungal isolate was not clear. Trichoderma SKT-1 produced irregular pyramidal warts on conidia and had an optimum growth temperature of 30°C. Morphological characteristics and colony growth were identical to those of known species of Trichoderma, including the newly recognized species T. asperellum. The 5.8S rDNA with the internal transcribed spacer (ITS) region (ca. 514 bp) of the fungus was compared with those of known species to determine the phylogenetic placement of the fungus. The length and sequence of the regions from Trichoderma SKT-1 were completely identical to those of an isolate of T. asperellum NRRL 5242 (AJ230669). On the basis of these results, we concluded that Trichoderma SKT-1 was T. asperellum.     

Capsid protein sequence gene analysis of <Emphasis Type="Italic">Apple mosaic virus</Emphasis> infecting pears

Apple mosaic virus (ApMV, genus Ilarvirus) was detected in pears, a previously non-reported virus host. No symptoms were visible on the hosts leaves. Seventeen out of 22 randomly selected pear trees in Italy (Lombardy) and in three regions in the Czech Republic were ApMV-infected. All nine newly sequenced ApMV isolates from pears had a 15-nucleotide insertion in the capsid protein gene in identical position of that of apple isolates compared with isolates from hop and prunes. The insertion is the most prominent (but not essential) modification of the capsid protein gene, which results in a phylogenetic separation of ApMV isolates into three clusters. Sequence analysis data of an additional 15 isolates revealed a sequence correlation with kernelled fruit trees (apple and pear).     

‘Candidatus Phytoplasma australiense’ is the phytoplasma associated with Australian grapevine yellows, papaya dieback and Phormium yellow leaf diseases

Sequence comparisons and phylogenetic analysis of the 16S rRNA genes and the 16S/23S spacer regions of the phytoplasmas associated with Australian grapevine yellows, papaya dieback and Phormium yellow leaf diseases revealed minimal nucleotide differences between them resulting in the formation of a monophyletic group. Therefore, along with Australian grapevine yellows, the phytoplasmas associated with Phormium yellow leaf and papaya dieback should also be considered as Candidatus Phytoplasma australiense.